Namespace
teambraker
Image / Tagbraker3:v.1.0.0
Content Digestsha256:cd03ed1f1212a754908b27179ce55547b5927352926d738579629d8f0665576c
Details
2023-01-12 16:03:56 UTC
15.7 GB
Labels
-
maintainerJupyter Project <jupyter@googlegroups.com>
Environment
AUGUSTUS_BIN_PATH/usr/bin/
AUGUSTUS_CONFIG_PATH/usr/share/augustus/config/
AUGUSTUS_SCRIPTS_PATH/usr/share/augustus/scripts/
CONDA_DIR/opt/conda
DEBIAN_FRONTENDnoninteractive
HOME/home/jovyan
LANGen_US.UTF-8
LANGUAGEen_US.UTF-8
LC_ALLen_US.UTF-8
NB_GID100
NB_UID1000
NB_USERjovyan
PATH/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats:/opt/cdbfasta:/opt/hisat2:/opt/stringtie-2.2.1.Linux_x86_64:/opt/gffread:/opt/diamond:/opt/TSEBRA/bin:/opt/MakeHub:/opt/sratoolkit.3.0.1-ubuntu64/bin/:/opt/BRAKER/scripts
SHELL/bin/bash
SUDO_FORCE_REMOVEyes
Layers
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[#031] sha256:d23446c814cf7fd1e54e5d3d76b3604e5301b335d45d058acdf821bc0436699e - 1.04% (167 MB)
[#032] sha256:107c5fa10648c3f8e82c6165e93c37c9fed82416afab4e3fb77c18adf039fff1 - 0.0% (43.5 KB)
[#033] sha256:ba4f43b5d1aa81f3bcb4dbe0df17938f59c7e3b1ebb50f92bdb5906bda27f1d8 - 0.01% (2.04 MB)
[#034] sha256:f8c6316a46ee51be188c7d3244c8534f5456ab2c2443cecf46399803cb102018 - 88.38% (13.9 GB)
[#035] sha256:5b033ec655559f928ab14c71e7a1e7476753d1a931626623c9cb619441f510c2 - 1.41% (227 MB)
[#036] sha256:3e98531203e2444ecd9855f4768d30347e633c1a71bdb693beb88595f67325ef - 1.83% (294 MB)
History
/bin/sh -c #(nop) ADD file:29c72d5be8c977acaeb6391aeb23ec27559b594e25a0bb3a6dd280bac2847b7f in /
2022-11-02 18:25:55 UTC/bin/sh -c #(nop) CMD ["bash"]
2022-11-14 09:11:41 UTC/bin/sh -c #(nop) LABEL maintainer=Jupyter Project <jupyter@googlegroups.com>
2022-11-14 09:11:41 UTC/bin/sh -c #(nop) ARG NB_USER=jovyan
2022-11-14 09:11:41 UTC/bin/sh -c #(nop) ARG NB_UID=1000
2022-11-14 09:11:41 UTC/bin/sh -c #(nop) ARG NB_GID=100
2022-11-14 09:11:42 UTC/bin/bash -o pipefail -c #(nop) SHELL [/bin/bash -o pipefail -c]
2022-11-14 09:11:42 UTC/bin/bash -o pipefail -c #(nop) USER root
2022-11-14 09:11:42 UTC/bin/bash -o pipefail -c #(nop) ENV DEBIAN_FRONTEND=noninteractive
2022-11-14 09:11:58 UTC|3 NB_GID=100 NB_UID=1000 NB_USER=jovyan /bin/bash -o pipefail -c apt-get update --yes && apt-get upgrade --yes && apt-get install --yes --no-install-recommends bzip2 ca-certificates fonts-liberation locales pandoc run-one sudo tini wget && apt-get clean && rm -rf /var/lib/apt/lists/* && echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && locale-gen
2022-11-14 09:11:58 UTC/bin/bash -o pipefail -c #(nop) ENV CONDA_DIR=/opt/conda SHELL=/bin/bash NB_USER=jovyan NB_UID=1000 NB_GID=100 LC_ALL=en_US.UTF-8 LANG=en_US.UTF-8 LANGUAGE=en_US.UTF-8
2022-11-14 09:11:59 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin HOME=/home/jovyan
2022-11-14 09:11:59 UTC/bin/bash -o pipefail -c #(nop) COPY file:8dad63fc2a9e6cdcfed7825b4b83cd11579b95893988da24039e4fbdcac669d8 in /usr/local/bin/fix-permissions
2022-11-14 09:12:00 UTC/bin/bash -o pipefail -c chmod a+rx /usr/local/bin/fix-permissions
2022-11-14 09:12:00 UTC/bin/bash -o pipefail -c sed -i 's/^#force_color_prompt=yes/force_color_prompt=yes/' /etc/skel/.bashrc && echo 'eval "$(command conda shell.bash hook 2> /dev/null)"' >> /etc/skel/.bashrc
2022-11-14 09:12:01 UTC/bin/bash -o pipefail -c echo "auth requisite pam_deny.so" >> /etc/pam.d/su && sed -i.bak -e 's/^%admin/#%admin/' /etc/sudoers && sed -i.bak -e 's/^%sudo/#%sudo/' /etc/sudoers && useradd -l -m -s /bin/bash -N -u "${NB_UID}" "${NB_USER}" && mkdir -p "${CONDA_DIR}" && chown "${NB_USER}:${NB_GID}" "${CONDA_DIR}" && chmod g+w /etc/passwd && fix-permissions "${HOME}" && fix-permissions "${CONDA_DIR}"
2022-11-14 09:12:01 UTC/bin/bash -o pipefail -c #(nop) USER 1000
2022-11-14 09:12:01 UTC/bin/bash -o pipefail -c #(nop) ARG PYTHON_VERSION=3.10
2022-11-14 09:12:02 UTC|1 PYTHON_VERSION=3.10 /bin/bash -o pipefail -c mkdir "/home/${NB_USER}/work" && fix-permissions "/home/${NB_USER}"
2022-11-14 09:12:02 UTC/bin/bash -o pipefail -c #(nop) COPY --chown=1000:100file:179851bbfc08bd0439e6af387106e34027bafd90d023177d76d0a3735a0a5c4b in /opt/conda/.condarc
2022-11-14 09:12:03 UTC/bin/bash -o pipefail -c #(nop) WORKDIR /tmp
2022-11-14 09:13:14 UTC|1 PYTHON_VERSION=3.10 /bin/bash -o pipefail -c set -x && arch=$(uname -m) && if [ "${arch}" = "x86_64" ]; then arch="64"; fi && wget -qO /tmp/micromamba.tar.bz2 "https://micromamba.snakepit.net/api/micromamba/linux-${arch}/latest" && tar -xvjf /tmp/micromamba.tar.bz2 --strip-components=1 bin/micromamba && rm /tmp/micromamba.tar.bz2 && PYTHON_SPECIFIER="python=${PYTHON_VERSION}" && if [[ "${PYTHON_VERSION}" == "default" ]]; then PYTHON_SPECIFIER="python"; fi && ./micromamba install --root-prefix="${CONDA_DIR}" --prefix="${CONDA_DIR}" --yes "${PYTHON_SPECIFIER}" 'mamba' 'notebook' 'jupyterhub' 'jupyterlab' && rm micromamba && mamba list python | grep '^python ' | tr -s ' ' | cut -d ' ' -f 1,2 >> "${CONDA_DIR}/conda-meta/pinned" && jupyter notebook --generate-config && mamba clean --all -f -y && npm cache clean --force && jupyter lab clean && rm -rf "/home/${NB_USER}/.cache/yarn" && fix-permissions "${CONDA_DIR}" && fix-permissions "/home/${NB_USER}"
2022-11-14 09:13:16 UTC/bin/bash -o pipefail -c #(nop) EXPOSE 8888
2022-11-14 09:13:16 UTC/bin/bash -o pipefail -c #(nop) ENTRYPOINT ["tini" "-g" "--"]
2022-11-14 09:13:17 UTC/bin/bash -o pipefail -c #(nop) CMD ["start-notebook.sh"]
2022-11-14 09:13:17 UTC/bin/bash -o pipefail -c #(nop) COPY multi:5aec193027c44e73f6a3168aa40af44afe9ccd46b85e4080bb8242f8a5e58657 in /usr/local/bin/
2022-11-14 09:13:17 UTC/bin/bash -o pipefail -c #(nop) COPY file:2f8301bc5e90d95b3c5a8f68e4dd4d35e2fe7bde531efaf36a585da8642b75e5 in /etc/jupyter/
2022-11-14 09:13:17 UTC/bin/bash -o pipefail -c #(nop) USER root
2022-11-14 09:13:18 UTC|1 PYTHON_VERSION=3.10 /bin/bash -o pipefail -c sed -re "s/c.ServerApp/c.NotebookApp/g" /etc/jupyter/jupyter_server_config.py > /etc/jupyter/jupyter_notebook_config.py && fix-permissions /etc/jupyter/
2022-11-14 09:13:18 UTC/bin/bash -o pipefail -c #(nop) HEALTHCHECK &{["CMD-SHELL" "wget -O- --no-verbose --tries=1 --no-check-certificate http${GEN_CERT:+s}://localhost:8888${JUPYTERHUB_SERVICE_PREFIX:-/}api || exit 1"] "15s" "3s" "5s" '\x03'}
2022-11-14 09:13:18 UTC/bin/bash -o pipefail -c #(nop) USER 1000
2022-11-14 09:13:18 UTC/bin/bash -o pipefail -c #(nop) WORKDIR /home/jovyan
2022-11-14 09:15:10 UTC/bin/bash -o pipefail -c #(nop) USER root
2022-11-14 09:15:10 UTC/bin/bash -o pipefail -c #(nop) ENV SUDO_FORCE_REMOVE=yes
2022-11-14 09:15:25 UTC/bin/bash -o pipefail -c apt-get -q update && apt-get -y remove sudo && apt-get -y upgrade && apt-get install -yq --no-install-recommends htop openssh-client vim rsync && apt-get clean && rm -rf /var/lib/apt/lists/*
2022-11-14 09:15:26 UTC/bin/bash -o pipefail -c #(nop) USER jovyan
2022-11-14 09:15:48 UTC/bin/bash -o pipefail -c mamba install --quiet --yes 'nbresuse' 'jupyter-starters' && conda clean --all -f -y && fix-permissions $CONDA_DIR && fix-permissions /home/$NB_USER
2022-11-14 09:17:30 UTC/bin/bash -o pipefail -c jupyter labextension install jupyterlab-topbar-extension jupyterlab-system-monitor
2022-11-14 09:18:13 UTC/bin/bash -o pipefail -c #(nop) LABEL maintainer=Jupyter Project <jupyter@googlegroups.com>
2022-11-14 09:18:13 UTC/bin/bash -o pipefail -c #(nop) SHELL [/bin/bash -o pipefail -c]
2022-11-14 09:18:13 UTC/bin/bash -o pipefail -c #(nop) USER root
2022-11-14 09:19:21 UTC/bin/bash -o pipefail -c apt-get update --yes && apt-get install --yes --no-install-recommends git nano-tiny tzdata unzip vim-tiny openssh-client less texlive-xetex texlive-fonts-recommended texlive-plain-generic && apt-get clean && rm -rf /var/lib/apt/lists/*
2022-11-14 09:19:24 UTC/bin/bash -o pipefail -c update-alternatives --install /usr/bin/nano nano /bin/nano-tiny 10
2022-11-14 09:19:24 UTC/bin/bash -o pipefail -c #(nop) USER 1000
2022-11-14 09:19:24 UTC/bin/bash -o pipefail -c #(nop) COPY --chown=1000:100file:418b8119d5a79fec269849d87cd70a165f8a443cd611dfd820642ec476178702 in /opt/conda/lib/R/etc/
2022-11-16 15:07:52 UTC/bin/bash -o pipefail -c #(nop) SHELL [/bin/bash -o pipefail -c]
2022-11-16 15:07:52 UTC/bin/bash -o pipefail -c #(nop) USER root
2022-11-16 15:12:15 UTC/bin/bash -o pipefail -c apt-get update --yes && apt-get install --yes --no-install-recommends build-essential cm-super dvipng ffmpeg time && apt-get clean && rm -rf /var/lib/apt/lists/*
2022-11-16 15:30:17 UTC/bin/bash -o pipefail -c apt update && apt-get install -y --no-install-recommends man-db g++ less zlib1g-dev && apt-get clean && rm -rf /var/lib/apt/lists/*
2022-11-16 15:30:20 UTC/bin/bash -o pipefail -c cd /opt && git clone --recursive https://github.com/clwgg/seqstats && cd seqstats && make
2022-11-16 15:30:20 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats
2022-11-16 15:30:26 UTC/bin/bash -o pipefail -c cd /opt && git clone https://github.com/gpertea/cdbfasta.git && cd cdbfasta && make
2022-11-16 15:30:26 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats:/opt/cdbfasta
2022-11-16 15:32:13 UTC/bin/bash -o pipefail -c cd /opt && git clone https://github.com/DaehwanKimLab/hisat2.git && cd hisat2 && make -j 16
2022-11-16 15:32:14 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats:/opt/cdbfasta:/opt/hisat2
2022-11-16 16:22:02 UTC/bin/bash -o pipefail -c cd /opt && wget http://ccb.jhu.edu/software/stringtie/dl/stringtie-2.2.1.Linux_x86_64.tar.gz && tar -xvf stringtie-2.2.1.Linux_x86_64.tar.gz
2022-11-16 16:22:02 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats:/opt/cdbfasta:/opt/hisat2:/opt/stringtie-2.2.1.Linux_x86_64
2022-11-16 16:22:10 UTC/bin/bash -o pipefail -c cd /opt && git clone https://github.com/gpertea/gffread.git && cd gffread && make
2022-11-16 16:22:11 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats:/opt/cdbfasta:/opt/hisat2:/opt/stringtie-2.2.1.Linux_x86_64:/opt/gffread
2022-11-16 16:22:15 UTC/bin/bash -o pipefail -c cd /opt && mkdir diamond && cd diamond && wget http://github.com/bbuchfink/diamond/releases/download/v2.0.15/diamond-linux64.tar.gz && tar -xf diamond-linux64.tar.gz && rm diamond-linux64.tar.gz
2022-11-16 16:22:15 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats:/opt/cdbfasta:/opt/hisat2:/opt/stringtie-2.2.1.Linux_x86_64:/opt/gffread:/opt/diamond
2022-11-21 11:44:25 UTC/bin/bash -o pipefail -c cd /opt && git clone https://github.com/Gaius-Augustus/TSEBRA && cd TSEBRA && git checkout braker3
2022-11-21 11:44:26 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats:/opt/cdbfasta:/opt/hisat2:/opt/stringtie-2.2.1.Linux_x86_64:/opt/gffread:/opt/diamond:/opt/TSEBRA/bin
2022-11-21 11:44:55 UTC/bin/bash -o pipefail -c cd /opt && git clone https://github.com/Gaius-Augustus/MakeHub.git && cd MakeHub && git checkout braker3 && wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/bedToBigBed && wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/genePredCheck && wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/faToTwoBit && wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/gtfToGenePred && wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/hgGcPercent && wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/ixIxx && wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/twoBitInfo && wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/wigToBigWig && wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/genePredToBed && wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/genePredToBigGenePred && chmod u+x bedToBigBed genePredCheck faToTwoBit gtfToGenePred hgGcPercent ixIxx twoBitInfo wigToBigWig genePredToBed genePredToBigGenePred make_hub.py
2022-11-21 11:44:55 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats:/opt/cdbfasta:/opt/hisat2:/opt/stringtie-2.2.1.Linux_x86_64:/opt/gffread:/opt/diamond:/opt/TSEBRA/bin:/opt/MakeHub
2022-11-21 11:44:55 UTC/bin/bash -o pipefail -c #(nop) ENV AUGUSTUS_CONFIG_PATH=/usr/share/augustus/config/
2022-11-21 11:44:56 UTC/bin/bash -o pipefail -c #(nop) ENV AUGUSTUS_BIN_PATH=/usr/bin/
2022-11-21 11:44:56 UTC/bin/bash -o pipefail -c #(nop) ENV AUGUSTUS_SCRIPTS_PATH=/usr/share/augustus/scripts/
2022-11-21 11:45:08 UTC/bin/bash -o pipefail -c apt update && apt install -yq augustus augustus-data augustus-doc && apt clean all && fix-permissions "${AUGUSTUS_CONFIG_PATH}"
2022-11-21 11:45:16 UTC/bin/bash -o pipefail -c apt update && apt install -yq libyaml-perl libhash-merge-perl libparallel-forkmanager-perl libscalar-util-numeric-perl libclass-data-inheritable-perl libexception-class-perl libtest-pod-perl libfile-which-perl libmce-perl libthread-queue-perl libmath-utils-perl libscalar-list-utils-perl && apt clean all
2022-11-21 15:12:21 UTC/bin/bash -o pipefail -c apt update && apt install -yq bedtools && apt clean all
2022-11-21 15:12:50 UTC/bin/bash -o pipefail -c cd /opt && wget https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/current/sratoolkit.current-ubuntu64.tar.gz && tar -xvf sratoolkit.current-ubuntu64.tar.gz
2022-11-21 15:12:50 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats:/opt/cdbfasta:/opt/hisat2:/opt/stringtie-2.2.1.Linux_x86_64:/opt/gffread:/opt/diamond:/opt/TSEBRA/bin:/opt/MakeHub:/opt/sratoolkit.3.0.1-ubuntu64/bin/
2022-11-21 16:12:41 UTC/bin/bash -o pipefail -c cd /usr/share/augustus/scripts && rm optimize_augustus.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/optimize_augustus.pl && rm aa2nonred.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/aa2nonred.pl && rm gff2gbSmallDNA.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/gff2gbSmallDNA.pl && rm new_species.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/new_species.pl && rm filterGenesIn.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/filterGenesIn.pl && rm filterGenesIn_mRNAname.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/filterGenesIn_mRNAname.pl && rm filterGenes.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/filterGenes.pl && rm join_mult_hints.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/join_mult_hints.pl && rm randomSplit.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/randomSplit.pl && rm join_aug_pred.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/join_aug_pred.pl && rm getAnnoFastaFromJoingenes.py && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/getAnnoFastaFromJoingenes.py && rm gtf2gff.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/gtf2gff.pl && rm splitMfasta.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/splitMfasta.pl && rm createAugustusJoblist.pl && wget https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/createAugustusJoblist.pl && chmod a+x optimize_augustus.pl aa2nonred.pl gff2gbSmallDNA.pl new_species.pl filterGenesIn_mRNAname.pl filterGenes.pl filterGenesIn.pl join_mult_hints.pl randomSplit.pl join_aug_pred.pl getAnnoFastaFromJoingenes.py gtf2gff.pl splitMfasta.pl createAugustusJoblist.pl
2022-11-21 16:12:46 UTC/bin/bash -o pipefail -c apt update && apt install -yq bamtools && apt clean all
2023-01-10 13:58:39 UTC/bin/bash -o pipefail -c cd /opt && mkdir odb && cd odb && wget https://v100.orthodb.org/download/odb10_arthropoda_fasta.tar.gz && tar xvf odb10_arthropoda_fasta.tar.gz && cat arthropoda/Rawdata/* > arthropoda_odb10.fasta && rm -rf arthropoda && wget https://v100.orthodb.org/download/odb10_fungi_fasta.tar.gz && tar xvf odb10_fungi_fasta.tar.gz && cat fungi/Rawdata/* > fungi_odb10.fasta && rm -rf fungi && wget https://v100.orthodb.org/download/odb10_metazoa_fasta.tar.gz && tar xvf odb10_metazoa_fasta.tar.gz && cat metazoa/Rawdata/* > metazoa_odb10.fasta && rm -rf metazoa && wget https://v100.orthodb.org/download/odb10_vertebrata_fasta.tar.gz && tar xvf odb10_vertebrata_fasta.tar.gz && cat vertebrate/Rawdata/* > vertebrata_odb10.fasta && rm -rf vertebrate && wget https://v100.orthodb.org/download/odb10_protozoa_fasta.tar.gz && tar xvf odb10_protozoa_fasta.tar.gz && cat protozoa/Rawdata/* > protozoa_odb10.fasta && rm -rf protozoa && wget https://v100.orthodb.org/download/odb10_plants_fasta.tar.gz && tar xvf odb10_plants_fasta.tar.gz && cat plants/Rawdata/* > plants_odb10.fasta && rm -rf plants
2023-01-10 13:58:42 UTC/bin/bash -o pipefail -c #(nop) USER 1000
2023-01-10 14:04:47 UTC/bin/bash -o pipefail -c mamba install --quiet -c bioconda -c anaconda --yes biopython && mamba clean --all -f -y && fix-permissions "${CONDA_DIR}" && fix-permissions "/home/${NB_USER}"
2023-01-10 14:04:52 UTC/bin/bash -o pipefail -c #(nop) WORKDIR /home/jovyan
2023-01-10 14:04:52 UTC/bin/bash -o pipefail -c #(nop) USER root
2023-01-12 16:03:54 UTC/bin/bash -o pipefail -c cd /opt && git clone https://github.com/Gaius-Augustus/BRAKER.git && cd BRAKER && git checkout braker3 && cd example && wget http://bioinf.uni-greifswald.de/augustus/datasets/RNAseq.bam
2023-01-12 16:03:55 UTC/bin/bash -o pipefail -c #(nop) ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/seqstats:/opt/cdbfasta:/opt/hisat2:/opt/stringtie-2.2.1.Linux_x86_64:/opt/gffread:/opt/diamond:/opt/TSEBRA/bin:/opt/MakeHub:/opt/sratoolkit.3.0.1-ubuntu64/bin/:/opt/BRAKER/scripts
2023-01-12 16:03:56 UTC/bin/bash -o pipefail -c #(nop) USER 1000
Delete Tag
Please be careful as this will not just delete the reference but also the actual content!
For example when you have latest and v1.2.3 both pointing to the same image
the deletion of latest will also permanently remove v1.2.3.